An integrated single-cell and spatial transcriptomic atlas of thyroid cancer progression identifies prognostic fibroblast subpopulations
— 2026
— JCI Insight
(Maxime Tarabichi)
Favorable histo-molecular remodeling of pancreatic ductal adenocarcinoma after neoadjuvant FOLFIRINOX followed by high-dose stereotactic body radiotherapy
— 2026
— British Journal of Cancer
(Oier Azurmendi, Vincent Detours)
Selective sweep probabilities in spatially expanding populations
— 2026
— Nature Communications
(Alexander Stein)
Tgf-β receptor signaling cell-intrinsically controls conserved microglia homeostatic maturation during zebrafish development
— 2026
— Cell Reports
(Ruben Lattuca)
Abstract 2709: PRECISE: A prognostic thyroid follicular cell-derived gene signature for papillary thyroid carcinoma.
— 2026
— Cancer Research
(Maxime Tarabichi)
Abstract 3534: Forecasting oncogene amplification and tumor suppressor deletion
— 2026
— Cancer Research
(Maxime Tarabichi)
Abstract B030: BRAF Treatment Response Determinants in Anaplastic Thyroid Cancer Studied Through Single Cell DNA and RNA Sequencing
— 2026
— Cancer Research
(Maxime Tarabichi)
An atlas of human histological diversity
— 2026
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Diego Serra, Hugo Mantion, Maxime Tarabichi, Vincent Detours, Zhao Zhang)
Chromosomal instability shapes spatial and temporal phenotypic diversity in a malignant peripheral nerve sheath tumour
— 2026
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Alexander Stein, Maxime Tarabichi)
Improving computational tumor ploidy estimation in complex cancer genomes through flow-cytometry-guided calibration
— 2026
— Cell Reports Methods
(Dalil Taher, Maxime Tarabichi)
Integrating Methylomic and Fragmentomic Profiling in Soft Tissue Sarcoma: Unravelling Novel Epigenetic Signatures
— 2026
— European Journal of Surgical Oncology
(Maxime Tarabichi)
Linking somatic mutations in cancer to the electronic properties of DNA
— 2026
— BMC Genomics
(Benoit de Witte, Maxime Tarabichi)
Luminal–basal stratification of the native human pancreatic duct is differentially represented in pancreatic cancers
— 2026
— Gut
(Oier Azurmendi)
PRECISE: A Prognostic Thyrocyte-Derived Gene Signature for Papillary Thyroid Carcinoma
— 2026
— Clinical Cancer Research
(Maxime Tarabichi)
Parent-of-origin phasing of somatic mutations shows equal mutation burden between parental genomes in human cancers
— 2026
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Mathieu Parmentier, Maxime Lefèbvre, Maxime Tarabichi, Vincent Detours)
Processed data for "Chromosomal instability shapes spatial and temporal phenotypic diversity in a malignant peripheral nerve sheath tumour"
— 2026
— Zenodo (CERN European Organization for Nuclear Research)
preprint
(Alexander Stein, Maxime Tarabichi)
Prognostic, Predictive, and Clinical Relevance of DNA Damage Repair Alterations in Biliary Tract Cancers
— 2026
— Cancers
(Oier Azurmendi)
Spatial and single‐nuclei transcriptomics reveals idiosyncratic and generic patterns in papillary and anaplastic thyroid cancers
— 2026
— Molecular Oncology
(Maxime Tarabichi, Vincent Detours)
Summary tables for Linking somatic mutations in cancer to the electronic properties of DNA
— 2026
— Zenodo (CERN European Organization for Nuclear Research)
preprint
(Benoit de Witte, Maxime Tarabichi)
alexsteininfo/Sweeps-In-Space: Code at the time of final paper submission
— 2026
— Zenodo (CERN European Organization for Nuclear Research)
preprint
(Alexander Stein)
Public Goods Games in Disease Evolution and Spread
— 2025
— Dynamic Games and Applications
(Alexander Stein)
On the patterns of genetic intra-tumor heterogeneity before and after treatment
— 2025
— Genetics
(Alexander Stein)
Profiling the genomic landscape and evolutionary history of polyploid giant cancer cells in undifferentiated pleomorphic sarcomas
— 2025
— Cancer Letters
(Maxime Tarabichi)
A Luminal–Basal Stratification of the Native Human Pancreatic Duct is Differentially Represented in Pancreatic Cancers
— 2025
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Oier Azurmendi)
Detection of Circulating Tumour DNA (ctDNA) with ddPCR and NGS in Liposarcoma
— 2025
— European Journal of Surgical Oncology
(Maxime Tarabichi)
Forecasting oncogene amplification and tumour suppressor deletion
— 2025
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Maxime Tarabichi)
Systematic analysis of A-to-I RNA editing upon release of ADAR from the nucleolus
— 2025
— RNA Biology
(Ruben Lattuca, Vincent Detours)
1102 Spatial identification of favorable molecular modulations after SBRT in pancreatic cancer with a practical staining-based classifier.
— 2025
— Radiotherapy and Oncology
(Oier Azurmendi)
A single-cell transcriptomic atlas reveals resident dendritic-like cells in the zebrafish brain parenchyma
— 2025
— eLife
preprint
(Ruben Lattuca)
Abstract 3888: Exploring intra-tumor heterogeneity in malignant peripheral nerve sheath tumors through single-cell multi-omics
— 2025
— Cancer Research
(Maxime Tarabichi)
Abstract 7153: Subclonal mutation load predicts survival and response to immunotherapy in cancers with low to moderate TMB
— 2025
— Cancer Research
(Maxime Tarabichi)
Abstract 7499: Driver mutations propel subclonal evolution and spatial patterns of tumor growth in intrahepatic cholangiocarcinoma
— 2025
— Cancer Research
(Maxime Tarabichi)
Abstract B099: Spatial identification of favorable molecular modulations after stereotactic body radiotherapy in pancreatic cancer with a practical staining-based classifier
— 2025
— Cancer Research
(Oier Azurmendi)
Author response: A single-cell transcriptomic atlas reveals resident dendritic-like cells in the zebrafish brain parenchyma
— 2025
— eLife
(Ruben Lattuca)
CLIP2: a novel functional player in AQP5 trafficking dynamics and implications for Sjögren’s disease
— 2025
— Cell Communication and Signaling
(Maxime Tarabichi)
Glycation Stress–Driven Transcriptomic Signature Predicts Survival Benefit from Adjuvant Gemcitabine in Resectable Pancreatic Cancer
— 2025
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Oier Azurmendi, Vincent Detours)
RASSF1A Methylation and Survival Outcome in Retroperitoneal Leiomyosarcoma
— 2025
— European Journal of Surgical Oncology
(Maxime Tarabichi)
Spatial map of native duct cell populations in human pancreas and their representation in pancreatic cancers
— 2025
— Pancreatology
(Oier Azurmendi)
Aneuploidy and complex genomic rearrangements in cancer evolution
— 2024
— Nature Cancer
(Maxime Tarabichi)
Epitranscriptomic rRNA fingerprinting reveals tissue-of-origin and tumor-specific signatures
— 2024
— Molecular Cell
(Ruben Lattuca)
The History of Chromosomal Instability in Genome-Doubled Tumors
— 2024
— Cancer Discovery
(Maxime Tarabichi)
Cancer-Associated Fibroblasts in Pancreatic Ductal Adenocarcinoma or a Metaphor for Heterogeneity: From Single-Cell Analysis to Whole-Body Imaging
— 2024
— Biomedicines
(Oier Azurmendi)
Genomic evolution shapes prostate cancer disease type
— 2024
— Cell Genomics
(Maxime Tarabichi)
Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction
— 2024
— Nature Biotechnology
(Maxime Tarabichi)
Impact of the radiological morphology of the mesopancreas on the outcome after pancreatoduodenectomy for pancreatic ductal adenocarcinoma: retrospective study
— 2024
— BJS Open
(Oier Azurmendi)
Reconstructing oral cavity tumor evolution through brush biopsy
— 2024
— Scientific Reports
(Maxime Tarabichi)
Subclonal mutation load predicts survival and response to immunotherapy in cancers with low to moderate tumor mutation burden
— 2024
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Maxime Tarabichi)
Description of a New miRNA Signature for the Surgical Management of Thyroid Nodules
— 2024
— Cancers
(Vincent Detours)
Favorable histo-molecular remodeling of pancreatic ductal adenocarcinoma after Total Neoadjuvant Therapy including Stereotactic Body Radiotherapy
— 2024
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Oier Azurmendi, Vincent Detours)
Idiosyncratic and generic single nuclei and spatial transcriptional patterns in papillary and anaplastic thyroid cancers
— 2024
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Maxime Tarabichi, Vincent Detours)
765: Immuno-molecular modulation in pancreatic cancer following ablative stereotactic body radiotherapy.
— 2024
— Radiotherapy and Oncology
(Oier Azurmendi)
Abstract 1758: Chromosome 3 copy number loss alone drives tumor evolution to aggressive disease in uveal melanoma
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract 1765: The genetic landscape of head and neck cancer using brush biopsy
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract 4337: Illuminating the complex rearrangement landscape of sarcoma
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract 4340: Profiling the evolutionary history of giant cancer cells in sarcomas: Hopeful monsters or an evolutionary dead end
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract 5671: Profiling intra-tumor heterogeneity and chromosomal instability in malignant peripheral nerve sheath tumors
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract 6216: Single cell DNA sequencing of BRAF treatment resistant anaplastic thyroid cancer
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract B002: Profiling intra-tumor heterogeneity and chromosomal instability in malignant peripheral nerve sheath tumors
— 2024
— Cancer Research
(Maxime Tarabichi)
Abstract B014: Immuno-modulation of the tumor microenvironment of pancreatic adenocarcinoma following isotoxic high-dose stereotactic body radiotherapy (iHD-SBRT)
— 2024
— Cancer Research
(Oier Azurmendi)
Histo-molecular changes in localized pancreatic ductal adenocarcinoma after high-dose SBRT following induction chemotherapy
— 2024
— Pancreatology
(Oier Azurmendi)
Stackelberg evolutionary game theory: how to manage evolving systems
— 2023
— Philosophical Transactions of the Royal Society B Biological Sciences
(Alexander Stein)
Dual targeting of MAPK and PI3K pathways unlocks redifferentiation of Braf-mutated thyroid cancer organoids
— 2023
— Oncogene
(Vincent Detours)
A Comprehensive Review of the Potential Role of Liquid Biopsy as a Diagnostic, Prognostic, and Predictive Biomarker in Pancreatic Ductal Adenocarcinoma
— 2023
— Cells
(Oier Azurmendi)
Author Correction: Pan-cancer analysis of whole genomes
— 2023
— Nature
(Maxime Tarabichi)
Resistance to Gemcitabine in Pancreatic Cancer Is Connected to Methylglyoxal Stress and Heat Shock Response
— 2023
— Cells
(Oier Azurmendi)
Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
— 2023
— Nature
(Maxime Tarabichi)
Author Correction: The repertoire of mutational signatures in human cancer
— 2023
— Nature
(Maxime Tarabichi)
CDK4 phosphorylation status and rational use for combining CDK4/6 and BRAF/MEK inhibition in advanced thyroid carcinomas
— 2023
— Frontiers in Endocrinology
(Maxime Tarabichi)
Author Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
— 2023
— Nature Genetics
(Maxime Tarabichi)
Author Correction: Patterns of somatic structural variation in human cancer genomes
— 2023
— Nature
(Maxime Tarabichi)
Author Correction: The evolutionary history of 2,658 cancers
— 2023
— Nature
(Maxime Tarabichi)
Author Correction: Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
— 2023
— Nature Genetics
(Maxime Tarabichi)
Author Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers
— 2023
— Nature Genetics
(Maxime Tarabichi)
Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
— 2023
— Nature Genetics
(Maxime Tarabichi)
Author Correction: Genomic basis for RNA alterations in cancer
— 2023
— Nature
(Maxime Tarabichi)
Author Correction: The landscape of viral associations in human cancers
— 2023
— Nature Genetics
(Maxime Tarabichi)
Abstract PR008: Timing complex copy number gains in whole genome duplicated tumors
— 2023
— Cancer Research
(Maxime Tarabichi)
Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes
— 2023
— Nature Biotechnology
(Maxime Tarabichi)
Signatures of copy number alterations in human cancer
— 2022
— Nature
(Maxime Tarabichi)
A pan-cancer compendium of chromosomal instability
— 2022
— Nature
(Maxime Tarabichi)
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
— 2022
— Genome biology
(Maxime Tarabichi)
Dynamic Cancer Cell Heterogeneity: Diagnostic and Therapeutic Implications
— 2022
— Cancers
(Vincent Detours)
Transplantable human thyroid organoids generated from embryonic stem cells to rescue hypothyroidism
— 2022
— Nature Communications
(Vincent Detours)
Leveraging single‐cell sequencing to unravel intratumour heterogeneity and tumour evolution in human cancers
— 2022
— The Journal of Pathology
(Maxime Tarabichi)
Systematic mapping of rRNA 2’-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis
— 2022
— PLoS Genetics
(Ruben Lattuca)
Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of pleural mesotheliomas to CDK4 /6 inhibition
— 2022
— Molecular Oncology
(Maxime Tarabichi)
Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
— 2022
— Communications Biology
(Maxime Tarabichi)
Author Correction: A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
— 2022
— Nature Communications
(Maxime Tarabichi)
Author Correction: Divergent mutational processes distinguish hypoxic and normoxic tumours
— 2022
— Nature Communications
(Maxime Tarabichi)
Author Correction: Pathway and network analysis of more than 2500 whole cancer genomes
— 2022
— Nature Communications
(Maxime Tarabichi)
Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction
— 2022
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Maxime Tarabichi)
Generation of human thyroid organoids from embryonic stem cells to rescue hypothyroidism
— 2022
— Endocrine Abstracts
(Vincent Detours)
Abstract 1606: Chromosomal instability drives spatial and temporal phenotypic diversity in Schwann cancer cells
— 2022
— Cancer Research
(Maxime Tarabichi)
Abstract 1698: Copy number diversity within and across tumor types
— 2022
— Cancer Research
(Maxime Tarabichi)
Abstract 2286: Profiling the complex rearrangement landscape of sarcoma
— 2022
— Cancer Research
(Maxime Tarabichi)
Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower
— 2022
— Nature Communications
(Maxime Tarabichi)
Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer
— 2022
— Nature Communications
(Maxime Tarabichi)
Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
— 2022
— Nature Communications
(Maxime Tarabichi)
Author Correction: Integrative pathway enrichment analysis of multivariate omics data
— 2022
— Nature Communications
(Maxime Tarabichi)
Author response for "Preclinical evaluation of CDK4 phosphorylation predicts high sensitivity of pleural mesotheliomas to CDK4 /6 inhibition"
— 2022
— Publons reviews and discussion
preprint
(Maxime Tarabichi)
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
— 2021
— Cell
(Maxime Tarabichi)
Breast tumours maintain a reservoir of subclonal diversity during expansion
— 2021
— Nature
(Maxime Tarabichi)
A practical guide to cancer subclonal reconstruction from DNA sequencing
— 2021
— Nature Methods
(Maxime Tarabichi)
Common clonal origin of conventional T cells and induced regulatory T cells in breast cancer patients
— 2021
— Nature Communications
(Maxime Tarabichi)
Therapeutic vulnerability to PARP1,2 inhibition in RB1-mutant osteosarcoma
— 2021
— Nature Communications
(Maxime Tarabichi)
Chemotherapy induces canalization of cell state in childhood B-cell precursor acute lymphoblastic leukemia
— 2021
— Nature Cancer
(Maxime Tarabichi)
Fluorescent Multiplex Immunohistochemistry Coupled With Other State-Of-The-Art Techniques to Systematically Characterize the Tumor Immune Microenvironment
— 2021
— Frontiers in Molecular Biosciences
(Vincent Detours)
Thyroid cancer under the scope of emerging technologies
— 2021
— Molecular and Cellular Endocrinology
(Maxime Tarabichi, Vincent Detours)
A pan-cancer landscape of somatic mutations in non-unique regions of the human genome
— 2021
— Nature Biotechnology
(Maxime Tarabichi)
DeCiFering the subclonal composition of tumors
— 2021
— Cell Systems
(Maxime Tarabichi)
Single-cell transcriptome analysis reveals thyrocyte diversity in the zebrafish thyroid gland
— 2021
— Yearbook of pediatric endocrinology
(Vincent Detours)
The repertoire of mutational signatures in human cancer
— 2020
— Nature
(Maxime Tarabichi)
Pan-cancer analysis of whole genomes
— 2020
— Nature
(Maxime Tarabichi)
The evolutionary history of 2,658 cancers
— 2020
— Nature
(Maxime Tarabichi)
Patterns of somatic structural variation in human cancer genomes
— 2020
— Nature
(Maxime Tarabichi)
Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing
— 2020
— Nature Genetics
(Maxime Tarabichi)
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes
— 2020
— Nature
(Maxime Tarabichi)
Comprehensive molecular characterization of mitochondrial genomes in human cancers
— 2020
— Nature Genetics
(Maxime Tarabichi)
Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
— 2020
— Nature Genetics
(Maxime Tarabichi)
Genomic basis for RNA alterations in cancer
— 2020
— Nature
(Maxime Tarabichi)
The landscape of viral associations in human cancers
— 2020
— Nature Genetics
(Maxime Tarabichi)
Robust estimation of bacterial cell count from optical density
— 2020
— Communications Biology
(Mathieu Parmentier)
Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer
— 2020
— Nature Genetics
(Maxime Tarabichi)
Integrative pathway enrichment analysis of multivariate omics data
— 2020
— Nature Communications
(Maxime Tarabichi)
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
— 2020
— Nature Communications
(Maxime Tarabichi)
Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
— 2020
— Communications Biology
(Maxime Tarabichi)
Divergent mutational processes distinguish hypoxic and normoxic tumours
— 2020
— Nature Communications
(Maxime Tarabichi)
Genomic footprints of activated telomere maintenance mechanisms in cancer
— 2020
— Nature Communications
(Maxime Tarabichi)
Sex differences in oncogenic mutational processes
— 2020
— Nature Communications
(Maxime Tarabichi)
Pathway and network analysis of more than 2500 whole cancer genomes
— 2020
— Nature Communications
(Maxime Tarabichi)
A community effort to create standards for evaluating tumor subclonal reconstruction
— 2020
— Nature Biotechnology
(Maxime Tarabichi)
High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
— 2020
— Nature Communications
(Maxime Tarabichi)
Transcriptional output, cell-type densities, and normalization in spatial transcriptomics
— 2020
— Journal of Molecular Cell Biology
(Vincent Detours)
Combined burden and functional impact tests for cancer driver discovery using DriverPower
— 2020
— Nature Communications
(Maxime Tarabichi)
Inferring structural variant cancer cell fraction
— 2020
— Nature Communications
(Maxime Tarabichi)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
— 2020
— Nature Communications
(Maxime Tarabichi)
Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
— 2020
— Nature Communications
(Maxime Tarabichi)
Drivers underpinning the malignant transformation of giant cell tumour of bone
— 2020
— The Journal of Pathology
(Maxime Tarabichi)
Author Correction: Robust estimation of bacterial cell count from optical density
— 2020
— Communications Biology
(Mathieu Parmentier)
Butler enables rapid cloud-based analysis of thousands of human genomes
— 2020
— Nature Biotechnology
(Maxime Tarabichi)
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples
— 2020
— Nature Communications
(Maxime Tarabichi)
Abstract 1320: The landscape of somatic substitutions in the repetitive genome across cancer types
— 2020
— Cancer Research
(Maxime Tarabichi)
Undifferentiated Sarcomas Develop through Distinct Evolutionary Pathways
— 2019
— Cancer Cell
(Maxime Tarabichi)
BRCA gene mutations do not shape the extent and organization of tumor infiltrating lymphocytes in triple negative breast cancer
— 2019
— Cancer Letters
(Vincent Detours)
Investigation of somatic CNVs in brains of synucleinopathy cases using targeted SNCA analysis and single cell sequencing
— 2019
— Acta Neuropathologica Communications
(Maxime Tarabichi)
Dissecting the Role of Thyrotropin in the DNA Damage Response in Human Thyrocytes after 131I, γ Radiation and H2O2
— 2019
— The Journal of Clinical Endocrinology & Metabolism
(Vincent Detours)
MOESM1 of Investigation of somatic CNVs in brains of synucleinopathy cases using targeted SNCA analysis and single cell sequencing
— 2019
— Figshare
preprint
(Maxime Tarabichi)
Transcriptomic analysis of human papillary thyroid carcinoma (PTC) with and without nodal metasis
— 2019
— Signaling Pathways Project Datasets
preprint
(Maxime Tarabichi)
Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation
— 2018
— Cell
(Vincent Detours)
Recurrent rearrangements of FOS and FOSB define osteoblastoma
— 2018
— Nature Communications
(Maxime Tarabichi)
Neutral tumor evolution?
— 2018
— Nature Genetics
(Maxime Tarabichi)
G enomic hotspots but few recurrent fusion genes in breast cancer
— 2018
— Genes Chromosomes and Cancer
(Vincent Detours)
Factors contributing to the resistance of the thyrocyte to hydrogen peroxide
— 2018
— Molecular and Cellular Endocrinology
(Vincent Detours)
Distinctive Desmoplastic 3D Morphology Associated With BRAFV600E in Papillary Thyroid Cancers
— 2018
— The Journal of Clinical Endocrinology & Metabolism
(Maxime Tarabichi, Vincent Detours)
Abstract 3000: Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
— 2018
— Cancer Research
(Maxime Tarabichi)
4 Patterns of clustered mutational processes: Pan-Cancer analysis of chromothripsis, chromoplexy and kataegis
— 2018
— ESMO Open
(Maxime Tarabichi)
Abstract 218: The evolutionary history of 2,658 cancers
— 2018
— Cancer Research
(Maxime Tarabichi)
33 PAN-cancer whole genome sequencing reveals patterns of subclonal mutations, signature changes and selection
— 2018
— ESMO Open
(Maxime Tarabichi)
Abstract 3801: Functional relevance of A-to-I RNA editing on the immune response in breast cancer
— 2018
— Cancer Research
(Vincent Detours)
PO-329 Rejecting neutral tumour evolution across human cancer types
— 2018
— ESMO Open
(Maxime Tarabichi)
PO-344 Osteoblastoma is characterised by recurrent rearrangements of FOS and FOSB
— 2018
— ESMO Open
(Maxime Tarabichi)
Immune Checkpoint Molecules on Tumor-Infiltrating Lymphocytes and Their Association with Tertiary Lymphoid Structures in Human Breast Cancer
— 2017
— Frontiers in Immunology
(Vincent Detours)
The human bitter taste receptor T2R38 is broadly tuned for bacterial compounds
— 2017
— PLoS ONE
(Maxime Tarabichi)
Abstract P1-05-02: Genomic, transcriptomic and immune features of breast cancer according to the patient's body mass index at diagnosis
— 2017
— Cancer Research
(Vincent Detours)
Gene signature of the post-Chernobyl papillary thyroid cancer
— 2016
— European Journal of Nuclear Medicine and Molecular Imaging
(Vincent Detours)
miRNA expression and function in thyroid carcinomas: a comparative and critical analysis and a model for other cancers
— 2016
— Oncotarget
(Maxime Tarabichi, Vincent Detours)
A research note regarding "Variation in cancer risk among tissues can be explained by the number of stem cell divisions"
— 2016
— F1000Research
(Maxime Tarabichi, Vincent Detours)
Peer Review Report For: A research note regarding "Variation in cancer risk among tissues can be explained by the number of stem cell divisions" [version 1; peer review: 2 approved]
— 2016
— F1000Research
(Vincent Detours)
Peer Review Report For: A research note regarding "Variation in cancer risk among tissues can be explained by the number of stem cell divisions" [version 1; peer review: 2 approved]
— 2016
— F1000Research
(Maxime Tarabichi)
Principles Governing A-to-I RNA Editing in the Breast Cancer Transcriptome
— 2015
— Cell Reports
(Vincent Detours)
Revisiting the transcriptional analysis of primary tumours and associated nodal metastases with enhanced biological and statistical controls: application to thyroid cancer
— 2015
— British Journal of Cancer
(Maxime Tarabichi, Vincent Detours)
New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer
— 2015
— BMC Genomics
(Vincent Detours)
Intratumor heterogeneity and clonal evolution in an aggressive papillary thyroid cancer and matched metastases
— 2015
— Endocrine Related Cancer
(Maxime Tarabichi, Vincent Detours)
No significant viral transcription detected in whole breast cancer transcriptomes
— 2015
— BMC Cancer
(Vincent Detours)
Comment on “Variation in cancer risk among tissues can be explained by the number of stem cell divisions”
— 2015
— bioRxiv (Cold Spring Harbor Laboratory)
preprint
(Maxime Tarabichi, Vincent Detours)
Abstract S4-02: Principles governing A-to-I RNA editing in breast cancer transcriptome
— 2015
— Cancer Research
(Vincent Detours)
Additional file 1: of New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer
— 2015
— Figshare
preprint
(Vincent Detours)
Additional file 2: of New global analysis of the microRNA transcriptome of primary tumors and lymph node metastases of papillary thyroid cancer
— 2015
— Figshare
preprint
(Vincent Detours)
Profiling of Olfactory Receptor Gene Expression in Whole Human Olfactory Mucosa
— 2014
— PLoS ONE
(Maxime Tarabichi)
Transfer of clinically relevant gene expression signatures in breast cancer: from Affymetrix microarray to Illumina RNA-Sequencing technology
— 2014
— BMC Genomics
(Vincent Detours)
230: BRAF V600E-mutated cells in a papillary thyroid carcinoma do not form a compact ball, but a mesh of cells sparsely embedded within the stroma
— 2014
— European Journal of Cancer
(Maxime Tarabichi, Vincent Detours)
Systems biology of cancer: entropy, disorder, and selection-driven evolution to independence, invasion and “swarm intelligence”
— 2013
— Cancer and Metastasis Reviews
(Maxime Tarabichi, Vincent Detours)
Comparative Analysis of the Thyrocytes and T Cells: Responses to H2O2 and Radiation Reveals an H2O2-Induced Antioxidant Transcriptional Program in Thyrocytes
— 2013
— The Journal of Clinical Endocrinology & Metabolism
(Maxime Tarabichi, Vincent Detours)
TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data
— 2013
— Nucleic Acids Research
(Vincent Detours)
Thyroid cancer cell lines: an overview
— 2012
— Frontiers in Endocrinology
(Maxime Tarabichi)
A gene expression signature distinguishes normal tissues of sporadic and radiation-induced papillary thyroid carcinomas
— 2012
— British Journal of Cancer
(Maxime Tarabichi, Vincent Detours)
A general method to derive robust organ-specific gene expression-based differentiation indices: application to thyroid cancer diagnostic
— 2012
— Oncogene
(Maxime Tarabichi, Vincent Detours)
InSilico DB genomic datasets hub: an efficient starting point for analyzing genome-wide studies in GenePattern, Integrative Genomics Viewer, and R/Bioconductor
— 2012
— Genome biology
(Vincent Detours)
A Measure of the Signal-to-Noise Ratio of Microarray Samples and Studies Using Gene Correlations
— 2012
— PLoS ONE
(Vincent Detours)
5-Aza-2′-Deoxycytidine Has Minor Effects on Differentiation in Human Thyroid Cancer Cell Lines, But Modulates Genes That Are Involved in Adaptation In Vitro
— 2012
— Thyroid
(Maxime Tarabichi)
Piecewise Polynomial Representations of Genomic Tracks
— 2012
— PLoS ONE
(Maxime Tarabichi, Vincent Detours)
Most Random Gene Expression Signatures Are Significantly Associated with Breast Cancer Outcome
— 2011
— PLoS Computational Biology
(Vincent Detours)
Genes Expressed in Specific Areas of the Human Fetal Cerebral Cortex Display Distinct Patterns of Evolution
— 2011
— PLoS ONE
(Vincent Detours)
Gene Expression Profiles for Radiation-induced Thyroid Cancer
— 2011
— Clinical Oncology
(Vincent Detours)
Differences in the expression profiles of normal contralateral tissues of papillary thyroid cancer patients exposed and not exposed to the Chernobyl fallout
— 2011
— Médecine Nucléaire
(Maxime Tarabichi, Vincent Detours)
Human cancer cell lines: Experimental models for cancer cells in situ? For cancer stem cells?
— 2009
— Biochimica et Biophysica Acta (BBA) - Reviews on Cancer
(Vincent Detours)
PP48 A proliferation measure integrates the outcome-related information contained in the breast cancer transcriptome
— 2009
— European Journal of Cancer Supplements
(Vincent Detours)
Gene Expression in RET/PTC3 and E7 Transgenic Mouse Thyroids: RET/PTC3 But Not E7 Tumors Are Partial and Transient Models of Human Papillary Thyroid Cancers
— 2008
— Endocrinology
(Vincent Detours)
Gene expression profiles of post-Chernobyl thyroid cancers
— 2008
— Current Opinion in Endocrinology Diabetes and Obesity
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Editorial comment should accompany hot papers online
— 2008
— Nature
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Roles of Hydrogen Peroxide in Thyroid Physiology and Disease
— 2007
— The Journal of Clinical Endocrinology & Metabolism
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Human Thyroid Tumor Cell Lines Derived from Different Tumor Types Present a Common Dedifferentiated Phenotype
— 2007
— Cancer Research
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Gene expression and the biological phenotype of papillary thyroid carcinomas
— 2007
— Oncogene
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Genome-wide gene expression profiling suggests distinct radiation susceptibilities in sporadic and post-Chernobyl papillary thyroid cancers
— 2007
— British Journal of Cancer
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Negative Feedbacks in Normal Cell Growth and Their Suppression in Tumorigenesis
— 2006
— Cell Cycle
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Absence of a specific radiation signature in post-Chernobyl thyroid cancers
— 2005
— British Journal of Cancer
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Gene expression in human thyrocytes and autonomous adenomas reveals suppression of negative feedbacks in tumorigenesis
— 2005
— Proceedings of the National Academy of Sciences
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Gene expression in thyroid autonomous adenomas provides insight into their physiopathology
— 2005
— Oncogene
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15 Systems biology, cell specificity, and physiology
— 2005
— Studies in multidisciplinarity
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Integration and cross‐validation of high‐throughput gene expression data: comparing heterogeneous data sets
— 2003
— FEBS Letters
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Prediction of proteasome cleavage motifs by neural networks
— 2002
— Protein Engineering Design and Selection
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Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation
— 2002
— Journal of Virology
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Evolutionary and immunological implications of contemporary HIV-1 variation
— 2001
— British Medical Bulletin
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Deriving Quantitative Constraints on T Cell Selection from Data on the Mature T Cell Repertoire
— 2000
— The Journal of Immunology
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The paradox of alloreactivity and self MHC restriction: Quantitative analysis and statistics
— 2000
— Proceedings of the National Academy of Sciences
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A Quantitative Theory of Affinity-driven T Cell Repertoire Selection
— 1999
— Journal of Theoretical Biology
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Explaining high alloreactivity as a quantitative consequence of affinity-driven thymocyte selection
— 1999
— Proceedings of the National Academy of Sciences
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Pull off those price tags
— 1998
— Nature
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Size and Connectivity of the Idiotypic Network Are Independent of the Discreteness of the Affinity Distribution
— 1996
— Journal of Theoretical Biology
(Vincent Detours)
Asynchrony Induces Stability in Cellular Automata Based Models
— 1994
— The MIT Press eBooks
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Development of an Idiotypic Network in Shape Space
— 1994
— Journal of Theoretical Biology
(Vincent Detours)
